Bergelson Lab @ Harvard
  • Bergelson Lab
  • Studies in Progress
    • Overheard Speech
      • Coding Overheard Speech (OvS)Files
      • Coding for different types of child directed speech
      • Coding for Decontextualized Language
      • Superchecker Duties
    • PBS
      • Recruitment
        • PBS Survey
        • PBS - Instructions
      • ELAN ~ Analyzing Files
        • PBS - PreppingandCoding
      • Eyetracking
        • PBS Checklists
          • PBS Checklist - First Parent Pick Up Visit
          • PBS Checklist - Second Visit
    • PreFunc
      • PreFunc Checklist
      • Acoustic processing for PreFunc
    • PROSPR
      • Audio stimuli processing
    • CLF Behavioral visits
      • CLF coding
    • Longitudinal CLF
    • WFR
  • List of Grants
  • Current Preregistrations
  • Experimental How To
    • Steps to Initiate a Study
      • Participant Tracking Sheet Style Guide
      • Making New Audio Stimuli
        • Finding your stimuli with a Textgrid
        • Transforming your sound file into individual files
      • Making New Visual Stimuli
    • Eyetracking
      • Eyetracker Troubleshooting
      • Eye Tracking Data
        • Downloading Eye Tracking Data from Iris
        • Key Press Issues
      • Eyetracker Cameras
      • Eye Tracking Training
        • Eye Tracking Road Test
    • WebCDI
      • Wrangling collected WebCDI data
    • HPP setup
      • HPP training in ELAN
    • Running Experiments on LookIt
    • Reliability coding Habit studies in ELAN
  • VIHI project
    • VIHI Corpus
      • Timeline
      • Generate an .eaf using the segment sampling script
      • Coding a VIHI file
        • Random samples coding
        • Marking PI in VIHI files
        • is_silent tier
        • Top Five coding
        • VIHI Parallel Annotation
      • Superchecker Duties
      • Pushing individual Subject_Files to github
      • VIHI intercoder ACLEW Reliability
      • Adding/Editing Tiers/Controlled Vocabularies
      • VIHI Child Production
        • Training
        • Coding Child Babble
        • Coding Child Production
        • Coding repetitions
      • Aggregating recording information
      • Annotations in csv format
      • Proposal for Parallel Annotation of VIHI
      • Bergelson Lab coding additions
      • Interqual Reliability
    • Participant Naming
    • Recruitment
      • Instagram Recruitment
      • TD Matching
    • File Organization- CHANGING
      • SubjectFiles
        • LENA
    • Play Sessions
      • Ambrose Dataset
        • Getting the Data & Setting Everything Up
        • Clan to Datavyu (more like data... whew!)
        • Coding in Datavyu
        • Camcorder
    • Eyetracking (HImp and HI-Cat)
      • SemPhonD checklist (TD)
      • UNC Cochlear Implant Center
        • Eyetracker
        • Procedure
        • Troubleshooting
    • Surveys
      • VI Longitudinal CDI
        • Syntactic complexity analysis
      • Importing New Demographics Surveys
      • Importing New CDIs
      • Sensory Norms Extension (Adults)
    • LENA (collection)
      • Recruitment
      • Receiving a new VI LENA
    • EEG Visits
      • Adult Recruitment
        • RedCap
      • EEG Cleaning Instructions
  • ACLEW-DARCLE transcription training
  • Research Assistant expectations & resources
    • New RA Instructions
    • Professional Development Resources for RAs
    • RA FAQ
    • Harvard Senior Thesis
      • Literature Review Resources
    • LD(LR)3
      • LD(LR)^2 Blitz instructions for blab-core (some years)
  • In-house data and code
    • Programming guidelines
    • BLAB_DATA
    • Git repos cloned on BLab share
    • Eyetracking data preparation
    • Collaboration: Technical Checklists
  • Technical resources and guides
    • Computing/ programming guides
      • R
        • Using Git from RStudio
        • ggplot2
        • blabr
          • R Style Guide
      • Git Basics: Happy git with BLab
        • Week 1 - Homework - Setup
        • Week 2 - Office Hours - Basic Process
        • Week 2 - Homework - R-Markdown
        • Week 3 - Homework
        • Week 3̷4- Office Hours
      • Virtual environments
        • renv - reproducible R environments
      • Git and GitHub
        • Set up Git and GitHub
      • CrashPlan backups
      • New computer setup
    • Quick programming/computing how-tos
      • Archiving a repo
      • Working with file paths
      • Setting environment variables
      • Rmd-to-pdf GitHub workflow
      • Find Computer Name
      • Python 2 conda env
      • Getting Python on your computer
      • Working with EAFs programmatically
      • Using Terminal/Shell/Command Line
      • Hybrid Meeting Setup
    • Troubleshooting/ common programming errors
  • Original ACLEW Project
    • ACLEW FAQ
    • High Volubility Project
      • Vetting High-Volubility Recordings
    • Lab Staff ACLEW Workflow
  • SEEDLingS - Nouns
    • Use SEEDLingS-Nouns in the scripts
    • Code
    • Update seedlings-nouns
      • Update annotations in CHAs and OPF
      • Update sparse_code.csv's
        • Whole corpus
        • One recording
        • Fixing FIXMEs
      • Update all_basic_level repository
      • Update seedlings_nouns
      • Troubleshooting
      • (legacy) global
    • Annotation Introduction
      • Masked Video Tutorial
        • Checking a Video File
      • Masked Audio Tutorial
    • Speaker Codes
      • Speaker Codes Cleanup - RAs
      • TVN and MAF speaker code fixes
    • SEEDLingS Follow-ups
      • SF5 Visit Protocol
      • SF5 Bus Story transcriptions
    • Sharing Rules and Permissions
    • Annotation Notes
    • Audio
      • Audio Annotation Checks
      • Skips, Silences, Make Up Regions & Extra Time
      • Audio Reliability Checks
      • CLAN Check - Troubleshooting
      • Audio Add Annotation IDs
      • Parse cha into a csv
      • Update sparse_code_csv
    • Video
      • Video Annotation Checks
      • Update sparse_code_csv
      • Errors Page
      • Video Reliability Checks
    • Child Productions
    • Production Checks
      • For phonetic CHI transcribers
    • Personal Information Guidelines
      • Video Scrubbing
        • Batch video scrubbing
      • Personal Information in Audios
      • addscrubtier
      • Audio Scrubbing
    • corpus uses of seedlings
      • PWT Reliability
      • Count / Mass
    • Audio Importing
    • Audio Processing
    • File Conversions
    • Audio Importing (LENA SP)
    • Seedlings Project Goals
    • Very special cases
  • Talker Variability corpus
    • CDS/ADS Coding- Talker Variability
    • Extract individual tokens
      • Extracting individual tokens from Box
      • Reliability of token exclusions
  • Education Outreach
    • Scoring the Draw A Scientist Task
  • Blog and Social Media
    • Social media
      • Twitter
      • TikTok
        • Blab TikTok Guidelines
        • Miscellaneous TikTok and video-general Tips
        • TikTok planning documents
    • Blog
      • Blog Basics
      • How to create a new blog post
        • How to add experiment video
        • Getting images from Wikipedia
        • Images from places other than Wikipedia
        • Misc review tips before posting
      • Editing Theme Code
      • How to view blog statistics
      • Blogs of interest for Inspo
  • Writing & submission process
    • RMarkdown ManyBabies Seminar
    • Formatting floats in Rmd (graphs and tables)
    • Literature Review Tips
    • Zotero
    • How to respond to reviewers & resubmit
  • Tips and Resources
    • Requesting help from IT
    • Resources for Learning R
    • Mentorship
    • Setting SMART Goals
    • Troubleshooting ELAN
    • Slack - Archived Channels and DMs with Previous Members
    • DIBS tutorials
    • Moving to Boston (Work in Progress)
  • Footnotes for Bulgarelli & Bergelson 2019
  • Archive
    • SEEDLingS
      • Assorted Scripts
        • clantime
        • extractaud
        • birthrecord
        • clancomments
        • Datavyu Scripts
          • fix_speakercodes script
        • Subregion Splicing
      • SEEDLingS Data pipeline (October 2021)
      • Moving files from Working Files back to Subject Files
      • One-time File Cleaning Processes
        • Subregion Fixes
        • Correct timestamps
    • Duke Archive
      • Blab Servers & virtual machines Duke
        • Transferring the CMU files to BLab share
      • How to Restore a File from the Backup
      • ARCHIVE Installing RPAD on new computers
      • ARCHIVE Moving to Durham
      • Coding for Gestures (summer 2017)
      • ARCHIVE-- Daily Check-In for RAs
      • ARCHIVE -- [not up to date] Glossary of BLAB Terms
      • ARCHIVE -- Duke IRB
        • How To: Add yourself or new blab-core members to a Campus IRB
        • How To: Receiving a "Protocol Expiring" and submit a Periodic Check-In
        • How To: make an amendment on a Campus IRB
        • How to: Close a Protocol at Duke
      • ARCHIVE: Studies finished collecting data
        • Picture Book
          • Picture Book Annotation
        • Yours/My
          • YOURS/MY Recruitment Scripts
          • Preparing the Experiment
      • Old sampler hours processes
        • ARCHIVE Remote SEEDLings Sampler Hours
        • ARCHIVE Sampler Hours- Seedlings
      • ARCHIVE/ see private pages: How to submit time cards
      • Eyetracking and Headturn (for RAs)
      • Saturday Visits Protocol
      • Currently Inactive Study Pages
        • [SRD] 3-monitor booth studies
        • Single monitor booth studies
        • [PB] Picture Book Lab Visits
        • [PB] Picture Book Post-Visit
        • Running ELASI at Duke
      • Talker Variability Zooniverse
      • Qualtrics to WebCDI
        • The Set-Up
        • Reformatting the Data
        • Uploading the Data
      • Duke Computing Cluster (DCC)
        • FileZilla
        • VTC (Voice Type Classifier)
      • Box
      • Programming RA log
      • Signing up as volunteer DPS
      • Sampler Hours- ACLEW
      • Process Improvement
      • PRIVATE Listservs of interest
      • Ancient: Connecting to Duke pn-opus and psych
      • Box - Word Integration
      • Too many Box notifications?
    • Using GitBook for Free
    • Old OSF Pages: An Official Archive
      • Old RA Instructions
        • Alternations coding protocol for RAs
        • Pointing, Walking, and Talking
        • SEEDLingS PB Study
        • How to fix video timestamps
        • RA Video Annotation Checks -- Rochester
        • Video Sharing on Databrary
      • OLD Extracting tokens in Praat for TVS-Corpus
      • Scripts and the like
        • Consensus Process for Audios
        • clanstats
        • Creating Past Stimuli Lists
        • Datavyu Script Repository
        • filegrouper
        • Subjfilecrawl
        • basicleveltidy
        • Directory Reader
        • NEWCLAN
        • pbwavelengths
        • response_id
        • speakers
        • WordCompare
        • Old Wordmerge directions
      • Old general Instructions
        • Old Audio Processing Process
        • Video Consensus Process
        • Exporting Subject Data
        • Finalizing a Month's Files
        • Flash Drive Management
        • Home Visits
          • Old Visit Payment Amounts
          • Picking up Recorders
          • Old Video Importing
          • Old Video Processing on Sony Vegas
          • Old USBs for Home Visits
        • How to Administer the PVT
        • Creating a new experiment
          • Making New Audio Stimuli
          • Old datasource creation
        • LENA Troubleshooting
        • In Lab Visits
          • Six Month (Initial) In-Lab Visit
          • Eyetracking Video Management
          • SF3 Lab Visit Protocol
          • Seedlings Script
        • Video Troubleshooting (Grau)
        • Old GoogleDocs
        • Subject Information and Data Locations
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Tips and Resources

Learning R, annotated bibliographies, Git, etc.

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Last updated 1 year ago

Requesting help from IT
Resources for Learning R
Mentorship
Setting SMART Goals
Troubleshooting ELAN
Slack - Archived Channels and DMs with Previous Members
DIBS tutorials
Moving to Boston (Work in Progress)