Bergelson Lab @ Harvard
  • Bergelson Lab
  • Studies in Progress
    • Overheard Speech
      • Coding a Overheard Speech (OvS)Files
      • Coding for different types of child directed speech
      • Coding for Decontextualized Language
      • Superchecker Duties
    • PBS
      • Recruitment
        • PBS Survey
        • PBS - Instructions
      • ELAN ~ Analyzing Files
        • PBS - PreppingandCoding
      • Eyetracking
        • PBS Checklists
          • PBS Checklist - First Parent Pick Up Visit
          • PBS Checklist - Second Visit
    • PreFunc
      • PreFunc Checklist
      • Acoustic processing for PreFunc
    • PROSPR
      • Audio stimuli processing
    • CLF Behavioral visits
      • CLF coding
    • Longitudinal CLF
    • WFR
  • List of Grants
  • Current Preregistrations
  • Experimental How To
    • Steps to Initiate a Study
      • Participant Tracking Sheet Style Guide
      • Making New Audio Stimuli
        • Finding your stimuli with a Textgrid
        • Transforming your sound file into individual files
      • Making New Visual Stimuli
    • Eyetracking
      • Eyetracker Troubleshooting
      • Eye Tracking Data
        • Downloading Eye Tracking Data from Iris
        • Key Press Issues
      • Eyetracker Cameras
      • Eye Tracking Training
        • Eye Tracking Road Test
    • WebCDI
      • Wrangling collected WebCDI data
    • HPP setup
      • HPP training in ELAN
    • Running Experiments on LookIt
    • Reliability coding Habit studies in ELAN
  • VIHI project
    • VIHI Corpus
      • Timeline
      • Generate an .eaf using the segment sampling script
      • Coding a VIHI file
        • Random samples coding
        • Marking PI in VIHI files
        • is_silent tier
        • Top Five coding
        • VIHI Parallel Annotation
      • Superchecker Duties
      • Pushing individual Subject_Files to github
      • VIHI intercoder ACLEW Reliability
      • Adding/Editing Tiers/Controlled Vocabularies
      • VIHI Child Production
        • Training
        • Coding Child Babble
        • Coding Child Production
        • Coding repetitions
      • Aggregating recording information
      • Annotations in csv format
      • Proposal for Parallel Annotation of VIHI
      • Bergelson Lab coding additions
    • Participant Naming
    • Recruitment
      • Instagram Recruitment
      • TD Matching
    • File Organization
      • SubjectFiles
        • LENA
    • Play Sessions
      • Ambrose Dataset
        • Getting the Data & Setting Everything Up
        • Clan to Datavyu (more like data... whew!)
        • Coding in Datavyu
        • Camcorder
    • Eyetracking (HImp and HI-Cat)
      • SemPhonD checklist (TD)
      • UNC Cochlear Implant Center
        • Eyetracker
        • Procedure
        • Troubleshooting
    • Surveys
      • VI Longitudinal CDI
        • Syntactic complexity analysis
      • Importing New Demographics Surveys
      • Importing New CDIs
      • Sensory Norms Extension (Adults)
    • LENA (collection)
      • Recruitment
      • Receiving a new VI LENA
    • EEG Visits
      • Adult Recruitment
        • RedCap
      • EEG Cleaning Instructions
  • ACLEW-DARCLE transcription training
  • Research Assistant expectations & resources
    • New RA Instructions
    • Professional Development Resources for RAs
    • RA FAQ
    • Harvard Senior Thesis
      • Literature Review Resources
    • LD(LR)3
      • LD(LR)^2 Blitz instructions for blab-core (some years)
  • Data and Code
    • BLAB_DATA
    • Git repos cloned on BLab share
  • Technical resources and guides
    • Computing/ programming guides
      • Eyetracking data preparation
      • Collaboration: Technical Checklists
      • Programming guidelines
      • R
        • Using Git from RStudio
        • ggplot2
        • blabr
          • R Style Guide
      • Git Basics: Happy git with BLab
        • Week 1 - Homework - Setup
        • Week 2 - Office Hours - Basic Process
        • Week 2 - Homework - R-Markdown
        • Week 3 - Homework
        • Week 3̷4- Office Hours
      • Virtual environments
        • renv - reproducible R environments
      • Git and GitHub
        • Set up Git and GitHub
      • CrashPlan backups
      • New computer setup
    • Quick programming/computing how-tos
      • Archiving a repo
      • Working with file paths
      • Setting environment variables
      • Rmd-to-pdf GitHub workflow
      • Find Computer Name
      • Python 2 conda env
      • Getting Python on your computer
      • Working with EAFs programmatically
      • Using Terminal/Shell/Command Line
      • Hybrid Meeting Setup
    • Troubleshooting/ common programming errors
  • Original ACLEW Project
    • ACLEW FAQ
    • High Volubility Project
      • Vetting High-Volubility Recordings
    • Lab Staff ACLEW Workflow
  • SEEDLingS - Nouns
    • Data pipeline (October 2021)
    • SEEDLingS Follow-ups
      • SF5 Visit Protocol
      • SF5 Bus Story transcriptions
    • Use SEEDLingS-Nouns in the scripts
    • Update seedlings-nouns
      • Update annotations in CHAs and OPF
      • Update sparse_code.csv's
        • Whole corpus
        • One recording
        • Fixing FIXMEs
      • Update all_basic_level repository
      • Update seedlings_nouns
      • FAQ
      • (legacy) global
    • Sharing Rules and Permissions
    • Annotation Introduction
      • Masked Video Tutorial
        • Checking a Video File
      • Masked Audio Tutorial
    • Speaker Codes
      • Speaker Codes Cleanup - RAs
      • TVN and MAF speaker code fixes
    • Annotation Notes
    • Audio
      • Audio Annotation Checks
      • Skips, Silences, Make Up Regions & Extra Time
      • Audio Reliability Checks
      • CLAN Check - Troubleshooting
      • Audio Add Annotation IDs
      • Parse cha into a csv
      • Update sparse_code_csv
    • Video
      • Video Annotation Checks
      • Update sparse_code_csv
      • Errors Page
      • Video Reliability Checks
    • Child Productions
    • Production Checks
      • For phonetic CHI transcribers
    • Personal Information Guidelines
      • Video Scrubbing
        • Batch video scrubbing
      • Personal Information in Audios
      • addscrubtier
      • Audio Scrubbing
    • Moving files from Working Files back to Subject Files
    • corpus uses of seedlings
      • PWT Reliability
      • Count / Mass
    • Assorted Scripts
      • clantime
      • extractaud
      • birthrecord
      • clancomments
      • Datavyu Scripts
        • fix_speakercodes script
      • Subregion Splicing
    • One-time File Cleaning Processes
      • Subregion Fixes
      • Correct timestamps
    • Audio Importing
    • Audio Processing
    • File Conversions
    • Audio Importing (LENA SP)
    • Seedlings Project Goals
    • Code
    • Cha/Opf Backups
  • Talker Variability corpus
    • CDS/ADS Coding- Talker Variability
    • Extract individual tokens
      • Extracting individual tokens from Box
      • Reliability of token exclusions
  • Education Outreach
    • Scoring the Draw A Scientist Task
  • Blog and Social Media
    • Social media
      • Twitter
      • TikTok
        • Blab TikTok Guidelines
        • Miscellaneous TikTok and video-general Tips
        • TikTok planning documents
    • Blog
      • Blog Basics
      • How to create a new blog post
        • How to add experiment video
        • Getting images from Wikipedia
        • Images from places other than Wikipedia
        • Misc review tips before posting
      • Editing Theme Code
      • How to view blog statistics
      • Blogs of interest for Inspo
  • Tips and Resources
    • RMarkdown ManyBabies Seminar
    • Requesting help from IT
    • Literature Review Tips
      • Zotero
    • Resources for Learning R
    • DIBS tutorials
    • Box - Word Integration
    • Mentorship
    • Too many Box notifications?
    • Setting SMART Goals
    • Troubleshooting ELAN
    • Slack - Archived Channels and DMs with Previous Members
    • Moving to Boston (Work in Progress)
  • Footnotes for Bulgarelli & Bergelson 2019
  • Archive
    • Duke Archive
      • Blab Servers & virtual machines Duke
        • Transferring the CMU files to BLab share
      • How to Restore a File from the Backup
      • ARCHIVE Installing RPAD on new computers
      • ARCHIVE Moving to Durham
      • Coding for Gestures (summer 2017)
      • ARCHIVE-- Daily Check-In for RAs
      • ARCHIVE -- [not up to date] Glossary of BLAB Terms
      • ARCHIVE -- Duke IRB
        • How To: Add yourself or new blab-core members to a Campus IRB
        • How To: Receiving a "Protocol Expiring" and submit a Periodic Check-In
        • How To: make an amendment on a Campus IRB
        • How to: Close a Protocol at Duke
      • ARCHIVE: Studies finished collecting data
        • Picture Book
          • Picture Book Annotation
        • Yours/My
          • YOURS/MY Recruitment Scripts
          • Preparing the Experiment
      • Old sampler hours processes
        • ARCHIVE Remote SEEDLings Sampler Hours
        • ARCHIVE Sampler Hours- Seedlings
      • ARCHIVE/ see private pages: How to submit time cards
      • Eyetracking and Headturn (for RAs)
      • Saturday Visits Protocol
      • Currently Inactive Study Pages
        • [SRD] 3-monitor booth studies
        • Single monitor booth studies
        • [PB] Picture Book Lab Visits
        • [PB] Picture Book Post-Visit
        • Running ELASI at Duke
      • Talker Variability Zooniverse
      • Qualtrics to WebCDI
        • The Set-Up
        • Reformatting the Data
        • Uploading the Data
      • Duke Computing Cluster (DCC)
        • FileZilla
        • VTC (Voice Type Classifier)
      • Box
      • Programming RA log
      • Signing up as volunteer DPS
      • Sampler Hours- ACLEW
      • Process Improvement
      • PRIVATE Listservs of interest
      • Ancient: Connecting to Duke pn-opus and psych
    • Using GitBook for Free
    • Old OSF Pages: An Official Archive
      • Old RA Instructions
        • Alternations coding protocol for RAs
        • Pointing, Walking, and Talking
        • SEEDLingS PB Study
        • How to fix video timestamps
        • RA Video Annotation Checks -- Rochester
        • Video Sharing on Databrary
      • OLD Extracting tokens in Praat for TVS-Corpus
      • Scripts and the like
        • Consensus Process for Audios
        • clanstats
        • Creating Past Stimuli Lists
        • Datavyu Script Repository
        • filegrouper
        • Subjfilecrawl
        • basicleveltidy
        • Directory Reader
        • NEWCLAN
        • pbwavelengths
        • response_id
        • speakers
        • WordCompare
        • Old Wordmerge directions
      • Old general Instructions
        • Old Audio Processing Process
        • Video Consensus Process
        • Exporting Subject Data
        • Finalizing a Month's Files
        • Flash Drive Management
        • Home Visits
          • Old Visit Payment Amounts
          • Picking up Recorders
          • Old Video Importing
          • Old Video Processing on Sony Vegas
          • Old USBs for Home Visits
        • How to Administer the PVT
        • Creating a new experiment
          • Making New Audio Stimuli
          • Old datasource creation
        • LENA Troubleshooting
        • In Lab Visits
          • Six Month (Initial) In-Lab Visit
          • Eyetracking Video Management
          • SF3 Lab Visit Protocol
          • Seedlings Script
        • Video Troubleshooting (Grau)
        • Old GoogleDocs
        • Subject Information and Data Locations
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Technical resources and guides

General technical topics, such as software setup, troubleshooting, and workflow basics. They are not specific to any lab projects or data, only to the way we do things.

PreviousGit repos cloned on BLab shareNextComputing/ programming guides

Last updated 10 months ago

Computing/ programming guides
Quick programming/computing how-tos
Troubleshooting/ common programming errors